Finding, trimming or splitting adapters, in Oxford Nanopore reads

The porechop package is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. Porechop also supports demultiplexing of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid Barcoding Kit.


Packageporechop
Version0.2.3-1.289d5dc (history)
Channelguix
Definitiongnu/packages/bioinformatics.scm
Build statusview 🚧
Home pagehttps://github.com/rrwick/porechop
SourceSource code archival status at Software Heritage.
Installation command
guix install porechop