Near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate as existing quantification tools.


Packagekallisto
Version0.48.0 (history)
Channelguix
Definitiongnu/packages/bioinformatics.scm
Build statusview 🚧
Home pagehttps://pachterlab.github.io/kallisto/
SourceSource code archival status at Software Heritage.
Installation command
guix install kallisto